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We have additional information for each compound assayed in the Drug Repurposing Hub Cell Painting Dataset.
There are at least four files on AWS, that could all work as a reference to describe comp…
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Thank you for your excellent work and interest comments during code. ：）When use cascade net in kits, we found similar issue with https://github.com/MIC-DKFZ/nnUNet/issues/45,the performance of cascade…
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Hi,
I modified demos/BRATS17 for 3D unet segmentation with my data (dimension :120x120x120, resolution 1x1x1). If I set the parameter: _spatial_window_size_ = (8,8,8) for label, and run the command…
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After testing with the latest release (1.10) we've encountered an error when using bcftools view and filter:
`chr1 17000202 . A C . clustered_events;haplotype;normal_artifact;strand_bias CONTQ=64;D…
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I'm using SAGE v1.1 but it doesn't seem to output any variants for me. I'm using a human tumour-normal dataset in which I have some somatic SNV, MNV and indel calls that are pretty convincing (called …
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Hi,
Here's my input script and below that is yml generated. I'm running pvacseq using the 1.5.1 docker container. It works fine for class I peptides of different lengths, but ignores any length I p…
ab604 updated
5 years ago
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I do not see vardict saying it support germline calling, but in this paper "Evaluating Variant Calling Tools for Non-Matched Next-Generation Sequencing Data", it use vardict for variant calling
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From @bsmarine
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Ideally, there would be a workflow possibly like this: user selects model they would like to use under "Auto Segmentation" and "Annotation" (which would only show…
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Hi gatk team,
I tested Mutect2 with [this code](https://github.com/hurrialice/mutect-benchmark/blob/master/src/canine_related/M2_standalone/M2scatter_standalone.sh) and not found many of the varian…