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```
Please replace current code with the biopp-filer library when ready.
```
Original issue reported on code.google.com by `daniel.g...@fudepan.org.ar` on 2 Feb 2012 at 6:10
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I guess it is maybe not needed as it can be done by hand, and it is definitely nothing fancy, but think it would be really nice if also PeptideShaker could do it. so something like Mascot does:
![ima…
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Hi @ramou @simaataei
I was able to run Toot-BertT easily given its straightforward installation but how can I run ToT-Bert_ICAT? Are you still writing executables like `run.py` or something that w…
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I'm following the database installation procedure here to run the pipeline (https://blobtoolkit.genomehubs.org/install/#databases).
I was successfully able to download the nt data. However, the u…
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## Is your feature request related to a problem? Please describe.
DAJIN2 v0.5.0 does not consider the detection sensitivity for unintended inversion alleles.
## Describe the solution you'd like
…
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I am running mitofinder on assembled contigs to search for mtDNA/Genomes. However, I am missing CO1 from the output. I thought maybe I just didn't capture that mtGene. However, to confirm my suspicion…
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```
What steps will reproduce the problem?
1. choose a FASTA file with long headers as infile.fasta
1. run 'cd-hit -i infile.fasta -o outfile.fasta'
2. run 'cd-hit -i infile.fasta -o outfile2.fasta -d…
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I am getting the following error:
```
2022-12-13 15:53:06,677 INFO:Finished hotspot generation for all chromosomes. Launching all caller commands.
Caller progress: 42%|████▏ | 4986/11962 [19…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…