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I have an idea of cleaning up mz data by removing 'weeds'. They could be interferences. I read `methods-XCMSnExp.R` file. It seems to me the default `filterMz()` is `range(mz)`.
Is it by any ch…
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Hi all, I want to set up an open search using FragPipes diagnostic ion mining setting. To start with, I'm working with a simple case model where I introduce a chemical modification to a single peptide…
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### My Platform
pip3 version: `pip 22.3.1 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7)`
Full command output:
```console
root@server:/server# pip3 install -r requirements.txt
Obt…
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Hi I keep getting this error when trying to run falcon
`TypeError: __init__() takes from 6 to 7 positional arguments but 8 were given`
This is the argument I am using
`falcon spectra_Bt1/*.mzML…
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The current version of ms2deepscore has tensorflow in the install_requires which prevents successful installation on m1 macbooks. I've managed to get ms2deepscore to install and run on my M1 MacBook b…
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### Describe the new term or terms you would like to add.
in the context of the new extension document on crosslinking, we think something is needed to encode that you searched for all the derivative…
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## Describe the bug
When calling the API page "/wp-json/wp/v2/pages/223", the following error is issued at irregular intervals (about every 10 to 20 reloads):
```
2022-10-07T08:32:25+00:00 CRIT…
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If i looked at the correct part of the code and understood it correctly, you are not using "injection duration" in computation of area under the chromatogram. I do not know if this is a case for other…
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Hi,
I found that for some MS identification results, the "addIdentificationData" function will not work. As quoted in the help document:
**If after filtering, more then one PSM per spectrum are…
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I am trying to analyze MS data from our proteomics facility with searchGUI but the search is interrupted each time.
`Error: Source '2022-11-16_Exploris480_P22-41_2665/Raw/Cement1.comet.pep.xml' do…