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Hii Robert
I have a new MacBook Pro with following specifications
Chip Apple M3 Max
Memory 36GB
macOS Sonoma 14.1
I was trying to test the Bactopia using docker…
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Hello，
Thanks for developing such a great tool. I am using IsoQuant to analyze ONT single-cell full-length transcriptome data and would like to obtain exon count information to calculate PSI. In th…
weib3 updated
4 months ago
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Here are the versions I used
```
dorado_basecall_server --version
Dorado Basecall Service Software, (C)Oxford Nanopore Technologies plc. Version 7.1.4+d7df870c0, client-server API version 15.0.0
…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v.1.2.1
### Workflow Execution
Command line (Cluster)
### Othe…
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Hi,
Thank you for providing TrEMOLO!
I got an error when running test data via singularity.
CHECKING R PACKAGES...
MAKE REPORT
Rscript -e "bookdown::render_book('index.Rmd', 'bookdown::gitbook'…
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**Description**
Hello, I am experiencing a bug upon running a Docker image as container for Bactopia.
**Steps to Reproduce**
Steps to reproduce the behavior:
```
docker run --rm -it -v "$PWD":…
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Hello,
I am encountering an issue where Canu fails to generate corrected reads because the overlap store is empty. Below are the details of the issue, steps taken to troubleshoot, and relevant log o…
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Hi! I was wondering how CARD determines whether or not an ARG is of clinical relevance? Is there a separate database to be used if one is only interested in clinically relevant ARGs? I was using Nanop…
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Hi, I'm running Breseq to compare two closely related lactobacillus strains and I am getting +10K> mutations.
During the run, I get an error saying that the strains seem much different (above 1% dif…
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I'm trying to run the read simulator in the perfect mode with the following code:
`simulator.py genome -rg simulated/simulated.fasta -k 6 -b guppy -s 1 --perfect --fastq`
But it generates an err…