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Hello,
I'm trying to fine tune a model with large repeat expansions (>500 hexamer repeats), where the standard model hallucinates biologically impossible repeats. The issue is that the number of re…
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**Version** : v4.2.2
**Describe the bug** :
I'm trying to benchmark Nanopore reads against the NIST v0.6 Tier 1 truth set but I'm getting the following error:
```
2024-03-28 09:58:39,498 [IN…
jeplb updated
6 months ago
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I have been trying to align ONT (Nanopore) sequencing reads using STARlong and have very poor alignment. I have had good success with minimap2, but I would like to use STAR for ease in downstream ana…
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Using Ubuntu 22.04 & 18.04 - latest versions of minKNOW do not let one choose and output folder other than the default.
I get a "Path not writable" error, meaning that more than likely the folder p…
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### Ask away!
Dear developer,
We are trying to use your wf-amplicon workflow on Epi2ME platform to quantify variants in amplicon libraries generated from the bacteria Desulfovibrio vulgaris. We ar…
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From Emma:
For some datasets, seems to be poor for calling MLST with Torsten's MLST tool with some data? May depend on input data quality and therefore quality of assembly. Could we try NanoMLST or…
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Hello, is there a specific citation format available for Dragonflye?
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Hi, thanks for making IsoQuant, when i run my ont sequencing data, i got the following error. would you please kindly help to fix it. many thanks! :)
Command line: /home/cario/bin/miniconda3/envs…
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Hello dear developers,
I am using Hapo-G for the first time to polish a 2.6Gb plant genome with Illumina, however, I am running out of RAM, the consumption is above 700GB of RAM and I do not have m…
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When I use the following command:
_aldy profile --cn-neutral-region chr22:17400001-21700000 my.bam > my.profile_
I get the profile and when I use it in:
_aldy genotype -p my.profile -g cyp2d6 my.ba…