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Dear MuPeXI developers,
I read your paper entitled "MuPeXI: prediction of neo-epitopes from tumor sequencing data" at https://doi.org/10.1007/s00262-017-2001-3. In Tables S1, it says that "The f…
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When I ran through the sample code you gave, I finally got the result that the file was compressed and deleted. After that, I ran my short peptide again while modifying some parameters of the script, …
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At the very end of your [first notebook](https://github.com/RobertsLab/Paper-DNR-Geoduck-Proteomics/blob/master/notebooks/SRM/01-Create-Skyline-Project.md#step-6-re-arrange-skyline-window) it says tha…
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Hi,
I was wondering if I could use AutoDock Vina scoring functions to evaluate protein-peptide complexes.
I used Python-based scripts from the AutoDock Vina website just for scoring the complexes.…
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```
What steps will reproduce the problem?
1. Serialize somthing containing a NaN Double Value
2. Deserialize it
Exception in thread "main" java.io.IOException: Expected token: null
Last read:
Pepti…
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rather than PSMs.
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The ProteomicsLFQ tool performs protein inference and FDR filtering of peptide/protein IDs (before quantification). It would be helpful to have an optional output (idXML file) of the IDs after these s…
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https://metabolomics-usi.ucsd.edu/mirror?usi1=mzspec:MSV000078836:T250-3-EA.mzXML:scan:1083660&usi2=mzspec:MSV000084314:MSV000078836.mgf:scan:44259&mz_min=50&mz_max=500
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Hello Fengchao and team,
I have performed a sample prep which uses both isotopic and isobaric labeling to essentially multiply the multiplexing capabilities. Specifically, for isotopic labeling I h…
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- [] number of features by chromosome
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