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The latest release (2019-11-12) is a big improvement over the previous version. When standing alone, all classes are satisfiable. After being incorporated into vertebrate.owl though, some of them be…
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Ontologies like MP, DPO, DDPHENO, FYPO, APO and HP will always curate their names themselves, but for XPO @seger @malcolmfisher103 @MardiNenni, ZP @ybradford, PLANP @srobb1 and PHIPO @jseager7 *this …
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The past months we were busy getting a bit more used to implementing and discussing new patterns. Making sure our definitions adhere to standard patterns is getting us 60% of the way to reconciliation…
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I have 18 scRNA experiments that were pooled from five mouse strains. I have split them into clusters using Souporcell, but am unclear how to integrate these together into a single object. They all sp…
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Hi Everyone,
this is a question rather than an issue;
Can one conduct a meta-analysis of MTAG outputs? Is this viable, or it would be like double-counting (as the SNPs put forward in the met…
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@Clare72 (FlyBase) has kindly started a review of alignments between DPO and PHIPO. Here are her notes:
DPO | PHIPO | Label DPO | Label PHIPO | Alignment | Note
-- | -- | -- | -- | -- | --
FBcv_0…
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Good day.
I am having the following problem when trying to run a GWAS:
At first, I had a similar issue to someone on this platform:
Options in effect: plink --adjust --bfile Kids_Merged --ci 0.…
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>If this is a request for a new term, please provide us with the following information.
>1. Preferred term label
**sex ratio distortion**
>3. Textual definition
**deviation from expected …
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Current state based on Tripal 3 Raw + Analyzed Phenotypes.
Share (i.e. analyzed)
- Trait Name: The full name of the trait as you would like it to appear on a trait page. This should not be abbrevi…
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In the vein of trying to provide concrete use cases, I thought I'd capture something on github that I knew we'd eventually want. A subset of http://www.ebi.ac.uk/cmpo/CMPO_0000309 might work:
![scre…