obophenotype zebrafish-phenotype-ontology issues

obophenotype / zebrafish-phenotype-ontology

A vocabulary for describing Zebrafish Phenotypes

https://obophenotype.github.io/zebrafish-phenotype-ontology/

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issues

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April 2024 release

#68 matentzn closed 3 months ago
0
GO deprecated various methylation (and other) terms

#67 matentzn opened 3 months ago
0
Add documentation pages to ZP

#66 matentzn closed 6 months ago
0
Release January 2024

#65 matentzn closed 6 months ago
0
GO deprecated various histone terms

#64 matentzn opened 6 months ago
0
Remove single CARO dependency from ZFIN annotations?

#63 matentzn opened 6 months ago
0
Remove one "0" from ZP:Phenotype

#62 matentzn closed 6 months ago
1
"Zebrafish Phenotype" (ZP:00000000) has 8 instead of 7 zeros

#61 matentzn closed 6 months ago
0
Missing GO terms?

#60 matentzn closed 6 months ago
2
Drafting a plan for pre-coordinating amerliorated an excacerbated phenotypes

#59 matentzn opened 8 months ago
2
Update ZP to ODK 14

#58 matentzn closed 1 year ago
0
Retiring the NBO Phenotype branch

#57 DitchingIt closed 1 year ago
2
AHHHHHHnsats.

#56 matentzn opened 1 year ago
2
ZP:0101990, 'retinal pigmented epithelium disrupted obsolete chemical homeostasis within retina, abnormal'

#55 matentzn opened 1 year ago
0
ZP December release

#54 matentzn opened 1 year ago
0
ZP:0019257 - "obsolete mitotic chromosome decondensation premature, abnormal"

#53 matentzn closed 1 year ago
6
ZP:0101932 - "obsolete nucleosome positioning process quality, abnormal"

#52 matentzn closed 1 year ago
4
ZP:0144208 - "cone photoreceptor outer segment ZFA:0005945 morphology, abnormal"

#51 matentzn closed 1 year ago
0
Handle obsolete fillers in ZP (December 2022)

#50 matentzn opened 1 year ago
2
Integration with NBO

#49 DitchingIt closed 1 year ago
3
ZFIN migration to pre-composed ZP curation?

#48 matentzn opened 2 years ago
0
ZP release 12.12.2021

#47 matentzn closed 2 years ago
0
ZP:0008499 and ZP:0000998 have the same label

#46 matentzn opened 2 years ago
1
Odd ZFA term in data (ZFA:0005943)

#45 matentzn opened 2 years ago
0
Uses of obsolete GO and ZFA terms

#44 matentzn closed 2 years ago
1
Add obofoundry topic to repo metadata

#43 cthoyt closed 3 years ago
1
Some changes I need to check

#42 matentzn opened 4 years ago
0
Gather example(s) for electrophysiology terms

#41 matentzn opened 4 years ago
0
Build

#40 matentzn closed 4 years ago
0
Update README.md

#39 drseb closed 4 years ago
0
Normal phenotypes

#38 matentzn closed 4 years ago
0
Get all phenotypes that refer to Qualitative traits and inhere in BPs

#37 matentzn opened 4 years ago
0
unsatisfiable classes when merged into vertebrate.owl

#36 RLWOHIO opened 4 years ago
13
Test whether an obsoleted class gets re-introduced into ZP, so the obsoletion can be revoked

#35 matentzn opened 4 years ago
0
Add abnormalBiologicalProcess back to external.txt

#34 matentzn closed 4 years ago
1
ZFIN uses obsolete GO:0044424 and GO:0044420

#33 matentzn opened 4 years ago
2
PATO:quality used instead of PATO:process quality in conjunction with GO process or function

#32 matentzn opened 4 years ago
2
Mass obsoletion

#31 matentzn closed 4 years ago
1
ZFIN sometimes uses GO:0005623 (cell) rather than ZFA. Intended?

#30 matentzn closed 4 years ago
3
Problem with redundancy of 'part of' axioms in ZFA with ZFIN

#29 matentzn opened 4 years ago
2
Design pipeline for recording when a ZP term is replaced by new ZP term

#28 matentzn opened 4 years ago
0
If a ZFIN term uses an obsolete class, this should be flagged

#27 matentzn opened 4 years ago
2
Remove equivalent classes from ZP

#26 matentzn closed 4 years ago
0
ZP:0103989 bearer currently broken

#25 matentzn closed 4 years ago
1
ZFIN pipeline seems to be only additive

#24 matentzn closed 4 years ago
2
Some normal phenotypes snug into ZFIN?

#23 matentzn opened 5 years ago
3
Add GO phenotypes to ZP (analogous to anatomy pipeline)

#22 matentzn closed 4 years ago
1
Improve ZP diff reports

#21 matentzn opened 5 years ago
1
ZP classes derived from the ZFIN-EQs no longer present should be deprecated

#20 matentzn closed 4 years ago
1
GO pipeline: Check whether we can restrict to taxon

#19 matentzn closed 4 years ago
1