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... Whenever I use a protein on a mon, it resets it to 40. So if I have a mon that has 194 proteins used and I use a protein today, it resets it back to 40. I'm going to assume that's not supposed to …
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import parmed
mol = parmed.load_file("mol.prmtop", "mol.rst7")
mol_cut = protein_ligand_complex[":1
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Based on the filter option (#1712) add functionality for the API to support filtering these tables. They should be all server side paginated.
You may also have to implement an init webservice for …
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Hi,
I am encountering cases where there are truncated proteins (missing stop codon) called by phanotate at the genome end. The common case was when there was another protein on the other side of the …
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Per issue #172, there is a request to restore the computationally predicted compound-to-protein edges (from ChEMBL) in RTX-KG2, that got dropped in KG2.6.0 when we deprecated all the old API-based RTX…
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Hello,
Thank you again for your help in my previous issue. I can finally run the ProtST task on my cluster using one GPU. However, I need clarification about the command that you provided.
I wan…
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We aren't explicitly testing the utilities for e.g. loading pdb files or transforming `smiles` to `selfies` and vice versa.
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- [ ] GO:0007260 tyrosine phosphorylation of STAT
- [ ] GO:0042509 regulation of tyrosine phosphorylation of STAT protein
- [ ] GO:0042531 positive regulation of tyrosine phosphorylation of STAT pro…
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#### Current behavior:
31 genes are discovered to be uncorrelated with their corresponding reactions in `Bile acid biosynthesis`/`Bile acid recycling`
| Gene | UniProtID | Reaction | GPR | C…
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output_monkey_uniprot_pdbfiles folder is corrupted