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Hi,
It could be interesting to extract the number of TAG, TAA, TGA used as STOP codon from Prodigal CDS prediction.
@ylana Do you think you can do that? You can take inspiration from the script `s…
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Hi Sam,
In my statistical analysis, some of the functions from the RefSeq_bac database are being categorized as different proteins only because of a small difference in their names like a dash (e.g…
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As I mentioned at some point I'm not to sure whether this provides too much value but uses a lot of space. This could potentially be replaced by a D3 slider implementation, where the distribution coul…
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We want to be able to deal with protein caps for proteins prepared with the Maestro software or the suite's protein preparation wizard. This will require to check what are the possible caps these use …
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**Are you using the latest release?**
Yep :)
```
funannotate --version
funannotate v1.8.15
```
**Describe the bug**
I get the following error message (in logfile section below) when running the…
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### What
- Show how much of the 100 g is not in the nutritional values
- For example, this butter http://world.openfoodfacts.org/product/4607053477306
* Fat: 72.5 g
* Carbohydrate: 1.4 g
* Pr…
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We notice that [CCL4's NCBIGene ID](https://nodenormalization-sri.renci.org/1.2/get_normalized_nodes?curie=NCBIGene:6351) will not retrieve a UniProtKB ID. However, there does seem to be a CCL4 UniPro…
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Hi,
I am trying to use graftM for the first time. I have paired-end shotgun metagenomic data for 8 samples.
1) Should I submit my qc'd reads or refined bins as input to build a phylogenetic tr…
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### Who for
### What
Something like that. Ideally, it would be able to use content pages, and turn them to JSON, so that we can scale the thing to many languages and many pages.
```
{
"stri…
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Hi,
Is there a way to request NCBI or Uniprot accessions and/or the functions of the target proteins using foldseek api ?
with the python command : result = get('https://search.foldseek.com/api…