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Yesterday's [automated ingest workflow failed](https://github.com/nextstrain/rsv/actions/runs/9469000811/job/26086691330#step:5:778):
```
[batch] [2024-06-11T16:10:05+00:00] Traceback (most recent…
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Hi!
While setting up a dry run to check if everything looks fine, I get the following error.
KeyError in file /mnt/hdd/Naman/Naman_wgs_trial/snparcher_trial/snpArcher/workflow/rules/common.smk, li…
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Hi everyone,
Can I use this workflow for tumor only variant calling to detect both Somatic and Germline variants? Or should I first run my data with Mutect in tumor only mode and then use varlocira…
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First of, great work with the library so far!! This is significantly better than what currently exists out there.
Many energy systems models can be extremely sparse. For example, in one recent case…
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https://youtube.com/shorts/4iWFJ5Ep6_Q
1.5.2, Android
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Hi,
I tend to get massive read loss at the end. something like retaining 1-5% of reads when my input is >100k reads to start.
i understand this may all be quality filtering etc. but would be nice …
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I already refactored this code a bit by pulling out the path below.
```python
def aggregate_contigs(wildcards):
# TODO - I do not further use this variable, but checkpoints needs to be called…
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```RuleException:
CalledProcessError in file /home/caspar/Code/dev/pypsa-eur/rules/build_electricity.smk, line 481:
Command 'set -euo pipefail; /home/caspar/miniforge3/envs/pypsa-eur/bin/python3.11…
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STR:
- Open the WebAPP.
- Move to the '**Settings**' and then go to the '**Feedback**' tab.
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Team, running into an iqtree error using iqtree in the nextstrain workflow.
The error message looks like this:
`Waiting at most 30 seconds for missing files.
MissingOutputException in line 750 of…