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Hi Haibao,
I am trying to install the jcvi package using **python3.7 -m pip install jcvi**. I got the following error -
Defaulting to user installation because normal site-packages is not writ…
siva5 updated
3 years ago
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I am currently try to assemble a fungal genome with Canu-racon-pilon pipeline using Oxford nanopore reads and illumina short reads. My fungal genome size is estimated at 37.5 Mb. The nanopore reads ha…
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The track model can be useful for synteny, even though it doesn't necessarily fit the conventional notion of a track, so that users can edit colors, turn on and off an overlay, etc.
Some possible t…
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I assemble mouse genome with nanopore long reads, but crash every time and I cannot figure out the reason.
There is the error message:
`Fri Jun 19 09:20:34 CST 2020
MAP RAW READS TO ASSEMBLY
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As visual inspiration
![](https://pbs.twimg.com/media/EFxsy_GX0AI-v0N?format=jpg&name=900x900)
Instead of making the synteny draw within the views space, as the breakpoint split view has, it c…
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Tried running docker build hal2vg (git cloned it with --recursive flag) but it came up with this huge error output I have no idea how to troubleshoot:
```
Sending build context to Docker daemon 15.…
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In the old search and multi views, hovering the mouse over a gene in the micro-synteny viewer or a plot caused a gene tooltip to be shown. Reimplement these tooltips in the new unified gene view.
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Could you please explain a bit in detail what is expected as input by the scriptALLHiC/scripts/link_superscaffold.pl
Thanks
Diego
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@lindseyfaye @rsmoak, let's put together the results we have so far into a PPT format. Perhaps one slide per result + any key method information. I'm currently working on the OrthoMCL results, and pla…
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Running `python -m jcvi.assembly.allmaps merge ` on my own maps (a male and female linkage map, formated identically to the CSV files in the example) resulted in a collision of map names...See outpu…