issues
search
ComparativeGenomicsToolkit
/
hal2vg
Convert HAL to VG
MIT License
21
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
clip-vg option to not abort when forwardizing cyclic reference
#70
glennhickey
closed
3 weeks ago
0
use new batch path destroyer to speed up clipping
#69
glennhickey
closed
1 month ago
0
fix slow anchor check in clip-vg
#68
glennhickey
closed
1 month ago
0
update to latest hal
#67
glennhickey
closed
1 month ago
0
Path sense
#66
glennhickey
closed
1 month ago
0
Flip-flop on mandatory reference haplotype
#65
glennhickey
closed
1 year ago
0
fix static check
#64
glennhickey
closed
1 year ago
0
always set haplotype for refsense -- vg 1.50.0 requires it
#63
glennhickey
closed
1 year ago
0
hal2vg segfault
#62
leleory
closed
1 year ago
4
Fix count-vg-hap-cov bug with 0-values
#61
glennhickey
closed
1 year ago
0
add -s option to filter-paf-deletions
#60
glennhickey
closed
1 year ago
0
Update libhandle graph
#59
glennhickey
closed
1 year ago
0
Use vg's path metadata
#58
glennhickey
closed
1 year ago
0
add some gap stats to count-vg-hap-cov
#57
glennhickey
closed
1 year ago
0
New workflow for hal2vg
#56
RenzoTale88
opened
2 years ago
7
Tool compute some basic coverage stats
#55
glennhickey
closed
2 years ago
0
Rewrite filter-paf-deletions
#54
glennhickey
closed
2 years ago
0
buildable archive hal2vg-v1.0.16.tar.gz :: not found
#53
EricDeveaud
opened
2 years ago
0
add interval tree
#52
glennhickey
closed
2 years ago
0
PAF deletion filter
#51
glennhickey
closed
2 years ago
0
Fix build script
#50
glennhickey
closed
3 years ago
0
halUnclip
#49
glennhickey
closed
3 years ago
1
Add nested subpath naming support; revert recent clip-vg changes
#48
glennhickey
closed
3 years ago
0
Fix up clip-vg softmask filter
#47
glennhickey
closed
3 years ago
0
Add softmasked only option to clip-vg
#46
glennhickey
closed
3 years ago
0
add -d option to clip-vg to help with minigraph filtering
#45
glennhickey
closed
3 years ago
0
Add some subpath naming support
#44
glennhickey
closed
3 years ago
0
add halMergeChroms tool
#43
glennhickey
closed
3 years ago
0
Clip components without -f
#42
glennhickey
closed
3 years ago
0
clip-vg fixes
#41
glennhickey
closed
3 years ago
0
Memory usage
#40
plattsad
opened
3 years ago
2
Add forwardization to clip-vg
#39
glennhickey
closed
3 years ago
0
clip-vg fixes
#38
glennhickey
closed
3 years ago
0
fix bug in removeDupes
#37
glennhickey
closed
3 years ago
0
Add dupe remover and name munger
#36
glennhickey
closed
3 years ago
0
clip-vg improvements
#35
glennhickey
closed
3 years ago
0
Throw in path-chopping tool
#34
glennhickey
closed
3 years ago
0
Use cache to only ever column iterate a site once
#33
glennhickey
closed
3 years ago
0
belatedly update release notes
#32
glennhickey
closed
4 years ago
0
Fix bug where column iterator could visit genomes outside target set
#31
glennhickey
closed
4 years ago
0
Version in help doesn't match release version
#30
glennhickey
opened
4 years ago
1
fix release script
#29
glennhickey
closed
4 years ago
0
Static build option
#28
glennhickey
closed
4 years ago
0
[WIP] Pinch across SNPs
#27
glennhickey
closed
4 years ago
1
SNPs can be left unaligned
#26
glennhickey
closed
4 years ago
0
Fix and generalize subsetting options
#25
glennhickey
closed
4 years ago
0
Add subsetting options
#24
glennhickey
closed
4 years ago
0
Fix Dockerfile
#23
glennhickey
closed
4 years ago
0
remove example_data/
#22
glennhickey
closed
4 years ago
0
Fix bug where non-star trees not fully converted
#21
glennhickey
closed
4 years ago
0
Next