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Great app, thanks!
Why can't we push aside a sequence by just pushing the first amino-acid or nucleotide from the sequence? When sequences are long, this would be easier for local alignments. And, I …
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It would be great if you can take a look at what happened and give me some clue!
Thanks!
2018-01-11T18:02:17.464782174Z processing FASTQ file
2018-01-11T18:02:17.474653029Z found 2796 reads
201…
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For several genes, I have observed that the 5' UTR is inconsistently annotated, even when the isoforms are very similar (only varying slightly in exon length). For example:
 and RefSeq genome [mRatBN7.2](https://www.ncbi.nlm.nih.gov/assembly/GCF_015227675.2/) of _Ra…
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Amazing tool!
It would be incredible if there was a way for us to link to SpliceVault from other tools so that it comes straight up with the gene / transcript and exon pre-populated.
Do you thin…
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- need JBrowse directory from John Bestelli
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Hello and thank you for the data package. However, when looking into the column heading explanations from Illumina, it seems like some columns are missing in the package. I am specifically looking for…
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Hi,
Thanks for the great package.
I was running spacemake with visium data, and got an exception:
rule run_automated_analysis:
input: projects/visium_demo/processed_data/DSG_Control/illumi…
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Hi,
When I try to analyze exon counts generated by EQP with DESeq2 package I get an error:
"Error in DESeqDataSet(se, design = design, ignoreRank) :
some values in assay are not integers"
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Some PM1 domain definitions are spanning intronic regions, ex;
chr10 89624265 89711937 P60484 1.0 83
chr10 89711949 89725067 P60484 1.0 83
These should be narrowed to cover the more accurate co…