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Hi there, thanks for this great tool!
About the demonstration of gwaslab, I have one little question about gwas analysis.
Certain gwas results may represent sproadic signals across whole genome, l…
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Hello,
first sample was done very well, but my second sample is stucking. My shell output is the following:
-1 SID16126_S10_L001_R1_001.fastq.gz -2 SID16126_S10_L001_R2_001.fastq.gz
[Wed 2022-0…
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Hello,
In my attempts to use ViralConsensus on the command line, I'm having trouble with certain reference fastas. When I provide a reference of 4153 nt, a consensus fasta is outputted properly. W…
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Hi! I want to build a reference ctat-genome-lib using the genecode version 36. I was wondering if I can download the `GRCh38_gencode_v33_CTAT_lib_Apr062020.source` folder and then run the following co…
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As the title says, do it for the genome(gene) page.
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Hi,
In your paper, it mentions that you use evolverSimControl to simulate Twenty primate genomes, then generate a cactus alignment, and use mafComparator to compare with Evolver MAF. You provide t…
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Hello,
I would like to express my gratitude for developing such a lightweight tool. I believe that data format conversion is a common issue in three-dimensional genome research and I would like to …
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Dear all,
i have an rna-seq (PE, ss, rRNA removed) from a moss species (no genome available). I run Kraken2 (default options) with plusPFP DB (containing some moss genomes), and what confuses me th…
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Potential enhancements of Snippy Streamline to be discussed:
- Quality assessment of reference genome (N50, number of contigs, BUSCO) added to Terra outputs
- additional output column that indicat…
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Hi,
after following the tutorial part of [https://spatialdata.scverse.org/en/latest/tutorials/notebooks/notebooks/examples/napari_rois.html#extracting-cells-under-the-regions](url), I tried to apply …