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Embedding igv.js inside of a shadow DOM breaks the UI since the CSS is [manually applied](https://github.com/igvteam/igv.js/blob/c8410100067cd94220cba5ac93734997e6f58701/scripts/embedCssTemplate.js#L1…
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I'm currently struggling to work out true conversion rates of an experiment and some of the mutiqc reports (i.e. rates and UTR rates) show much higher than expected conversion rates even for the contr…
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When running a specific dataset in SQANTI3 (both v.5.2 and v.4.3), the final _isoforms.fasta_ file contains isoforms that have some mononucleotide deletions and are misplaced compared to their expecte…
eprdz updated
3 months ago
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**Describe the bug**
Running the 'whole genome simulation' in the readme here[here](https://github.com/ncsa/NEAT/) , this error arisen:
raise ValueError("Bad mode %r" % mode)
ValueError: Bad mode '…
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The genome browser tracks have a 'padding' left of the first genome position. When hovering the mouse over the reference genome track in this padding area, negative positions are shown in the tooltip.…
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Hi,
thanks for this toolset. I've only been interested in Centrominer which is great for Arabidopsis, but suffers greatly on other genomes, even Bean, which is only about 500mb.
The problem I se…
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### Overview
In this homework, we are going to learn some Python skills that you might use throughout this project. The first things you will learn about are:
- Commenting and uncommenting lines…
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[chrX.zip](https://github.com/GMOD/jbrowse-components/files/14748081/chrX.zip)
Hi! Thanks for this nice tool! I am using JBrowse2 to visualize nucleotide dependencies in the genome at 1-bp resolu…
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Results of `test_package.sh` i.e. `lintian`:
> N: Using profile ubuntu/main.
N: Setting up lab in /tmp/temp-lintian-lab-1eOGWqGLeH ...
N: Starting on group loris/21.0.0
N: Unpacking packages in …
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Hi,
Is it possible to try to use the fragmented and partial hits to edit the annotation file? In my case, I think my annotation has several fragmented genes, so It would be incredibly useful If one…