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![image](https://github.com/cov-lineages/pango-designation/assets/78371872/929492f3-5e76-40ad-876d-2d822119efec)
tree : https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2b…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1156
![image](https://github.com/cov-lineages/pango-designation/assets/78371872/f4601968-ef83-4648-beff-4d94adb95bc4)
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New seqs uploaded from Kenya reveals more GE.1.2 branches.
GE.1.2.1+G332A, G22021A,C29666T
GISAID query: G332A, G22021A,C29666T
No. of seqs: 15(Kenya)
First: EPI_ISL_18788227, 2023-11-21
Lates…
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JN.1.1+C9142T+G25352T(S:V1264L)
GISAID query: C9142T,G25352T,C11747T,-3259,-20480
No. of seqs: 49(Canada 2 UK 1 Finland 1 France 37 Ireland 1 Singapore 1 USA 1 Netherlands 1 Spain 4)
First:EPI_…
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This branch belongs to JN.1.4, is prevalent in the United States, with E: P71S, according to studies can cause more serious disease mutations, E: P71L/S in the late evolution of HV.1 and XBB.1.16.6, t…
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JN.1+C23634T(S:S691F)
GISAID query: C23634T, T27810C, T3565C
No. of seqs: 28(Denmark)
First: EPI_ISL_18518655, 2023-11-6
Latest: EPI_ISL_18681076, 2023-12-4
[usher](https://nextstrain.org/f…
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Defining mutations:
JN.1.1>C11747T>C9142T>saltation branch
nuc and AA mutations:
ORF1a: C4069T, C4999T, A11951T (ORF1a:N3896Y), G11954T (ORF1a:D3897Y)
ORF1b: C19951A (ORF1b:P2162T)
S: G22344C (S…
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![image](https://github.com/sars-cov-2-variants/lineage-proposals/assets/10445944/6b9f4b76-a4e6-4073-871d-96923040ee61)
JD.1.1--Main page #2436(HK.13.1+S:Q14R)--JD.1.1
Breakpoint 1 between 6897 …
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Currently the fastest JN.1 is JN.1.11.1, and it's getting more spike mutations in undersampled regions.
JN.1.11.1+A24819G(S:K1086R)
GISAID query: A24819G,C7113T
No. of seqs: 5(USA 3(1 from Qata…
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From branch 1 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1135
BA.2.86.1+C21846T(S:T95I)
GISAID query: C21846T,A6183G,C12815T,-11750,-3565,-A2127G
No. of seqs: 23(Austral…