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I have assembled hap1 and hap2, and I want to use the VCF of hap1 relative to hap2 for splitting reads with Whatshap haplotag. When I simulate second-generation sequencing data using hap1 and hap2 sep…
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I think many times if a track is auto-adjusted to it's current layout height, which is bounded by a maxHeight, it can be better than if the track has a small height and is scrollable in that small ar…
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see https://github.com/course-fish546-2023/assistance-public/issues/9#issuecomment-1535606240
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Hi,
I am using bcftools consensus using v1.15 and got SNPs which were weirdly not called, so I went back to the vcf files.
I have SNPs which I know exist (I am working on simulated reads) which ar…
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Dear Marvin Jens,
Good day!
I am currently using the find_circ program developed by you for my work. I noticed there are additional arguments (--stranded & --strandpref). May I know the function…
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Hi dear,
firstly thank you for providing Deepsignal. I am wondering how can ı visualize the output of Deepsignal? could you offer any package or guideline in order to visualize the output data? Als…
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Hi,
I encountered an issue with the `hgvs` Python library where the normalized HGVS result seems to differ from that of Mutalyzer, and also from what I observed in IGV.
### Variant details:
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Hello,
I wonder if anyone can tell me how to remove the grey line (at about 27,263 bp) that seems to be cutting off base display of the reads. The position of this line shifts as I change the magnif…
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Can I determine which regions are LOH(Loss of Heterozygosity)) based on the results of CNV analysis?
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I aim to detect a variant at chr5:51902807 in 1,700 bam files (It is a rare variant; AC