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Currently all the files below get left behind whenever the unit tests run. But the unit test code should delete any files it creates. To use pytest properly, I think we'd want to do something like thi…
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### Context
Imputation strategies for #508
### Problem or idea
We don't want processing the species compendia to take 20 years and we need a better idea of the run time and memory requirement…
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Hi Arne,
first thanks for the helpful package.
I was recently playing around with the `test_diff` function, comparing different imputation methods, when I noticed it sometimes returns the p-valu…
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I've been getting errors trying to use genomic_converter() and write_colony().
I generated my original .vcf file in ipyrad, and then used PLINK to do some preliminary filtering (removing triallelic l…
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Hi Vivian,
I am trying to impute dropouts from a csv of UMI values (around 40000 genes and 6000 cells).
The codes are listed below.
`scImpute::scimpute(count_path = "all_umi_raw.csv",
…
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Hello Community,
I just started using XCMS a few days ago. I'm following the XCMS vignette for LCMS preprocessing (https://bioconductor.org/packages/release/bioc/vignettes/xcms/inst/doc/xcms.html#6…
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Hi Thierry,
Thanks for all your work with radiator! I'm getting an error when trying to convert a VCF file (v4.2, biallelic, produced by FreeBayes) to genlight. This is the command used:
`genomi…
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Generally does the model performance get better with that ?
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@feenberg said in an email:
>There are quite a number of variables in the PUF that are arithmetic functions of more basic variables. These include AGI, Itemized Deductions, Taxable Income, tax, etc. …
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Hello,
I used the MICE function for multiple imputation previously and it ran in about 10-20 minutes for m=5. Since the update, I am running the same function with the same parameters on roughly th…