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It would be great if analyses could migrate like features migrate. The features table has a type column, so the migration just uses the cvterm in the type column as the Cvterm for the entity to migra…
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Hi,
I am trying to set up the port number to run the local lookup service. But it stated that some apps are missing. Are they essential? If the answer is yes, I need to find out whether I could ins…
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Hi, I am getting following error when running 5-24.63 Tried with previous versions, and it seems to occur from 5-20-59 version.
```03/08/2017 11:25:08:566 25% completed
03/08/2017 11:32:19:066 50…
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Hi Interproscan,
I'm trying to run the Interproscan pipeline, but am having trouble with some of the packaged compiled binaries, specifically rpsbproc:
```
./rpsbproc -h
./rpsbproc: /usr/lib64/lib…
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Hi,
Running Funannotate v1.3.2, I got and error in the Predicting tRNAs step:
File "/services/tools/anaconda2/4.4.0/lib/python2.7/subprocess.py", line 1025, in _execute_child
raise child_…
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Hi @meren,
I have been fiddling around and I got to make a simple Shell script to get the IPRS output with `-goterms` into the anvio database. So I thought somebody would find it useful.
Note that…
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Hi,
I can run InterProScan (v5.25-64.0) on the test file test_proteins.fasta but I get an error when I try to use my own data.
Any suggestions on what went wrong?
I used the command:
`inte…
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This looks all great and I am just about to get it going. Before that though I was wondering if it is possible to add another custom column to the functional_annotation.txt e.g. Cazy, merops or a made…
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Reading the faq about running funannotate on other organisms, one of the things I've noticed is that I should specify "--eggnog_db". I downloaded the relevant database using "funannotate eggnog", but …
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Dear Jon,
I looked thoroughly at my previous funannotate results (derived a month ago) and found that **funannotate-p2g.py** seems to fail. As a result, finally, out of 500,000 proteins, tblastn ha…