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Hi again,
I am starting a new issue here as it is technically now a new issue, but this is still part of my journey established in now-monstrous-in-size recent threads:
- #577
- #582
I am now …
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Pretty self-explanatory. We're trying to eliminate the need to process data in fastq format, so it would be terrific if cutadapt could accept ubam input and write ubam output. (We probably don't need …
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Hello,
I have a question about something I noticed.
Initially, wfmash aligns very fast, but then the number of aligned bp per second slowly declines.
This continues until it is almost done, with …
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### Is your feature related to a problem?
In one of my samples, wf-single-cell fails to correctly find the cutoff in the knee plot and returns an excessive large number of cells. Consequently, when l…
ddiez updated
3 weeks ago
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Hi Nanocdisco team:
Thank you for developing this great tool.
I have a question may be on the side of singularity, that how to mount my dir into the container, in order to use my fast5 files from…
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The assembly finished but I got this message:
== ERRORs:
* system call for: "['/Volumes/ExternalHD500/SPAdes-3.13.0-Darwin/bin/spades-core', '/Volumes/ExternalHD500/spades_K21_25_33_55_C1/K55/con…
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I am attempting to run Spades with both short, paired end reads and Oxford Nanopore long reads.
The genome is estimated to be around 1.5 Gbp using GenomeScope. This is an organism with a relatively h…
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### Description of the bug
I just want to use the pipeline for QC'ing my nanopore data, but it prematurely terminates after the initial step of the pipeline:
```bash
[70/93224f] process > NFCOR…
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while i was trying to run flappie after installing the python modules and other dependencies, i got stuck in middle which is attached below as snapshot. Please help me in sorting out this issue.Thanks…