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I am writing to inquire about the possibility of obtaining scaffold circularity information from a .gfa file and incorporating it into the .fasta file headers. I have discovered that the --seq-report …
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From @CeciliaDeng
BTW, we haven't checked duplicate sequences in assembly, have we? I can't remember if the QC pipeline checks for mitochondria/plastids/ribosomal rna contaminations. If not, we ma…
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I get the following error during rehydration
```
Error:
File unavailable ([gateway] 404 Not Found): ncbi_dataset/data/GCF_003031525.2/GCF_003031525.2_Neophocaena_asiaeorientalis_V1_genomic.fna.g…
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Hi,
I am following my previous issue #304, it has been closed.
I am already using 'salmonella' in submol.yaml, but I am not able to get the results. When I change the genus_species as 'Escherichi…
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Hello, I had issues before and you were very helpful! Now, I have a new problem.
I work with the axolotl genome, it is huge. We have performed ATAC seq, in order to do this we needed to cut the …
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### Description of the bug
This maybe nothing at all but maybe important to mention in the documentation, that this process may require restart...
At the download genome assemblies step, I got thi…
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Hello,
I am trying to use metaphor with my data. I installed it in a cluster (NAME="CentOS Linux", VERSION="8", PLATFORM_ID="platform:el8") following the tutorial:
```
mamba create -n metaphor -…
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Hello,
Some of my runs of FCS-GX have crashed with the message `Error: Process failed with retcode -13`. The log of a run like that is below.
```
================================================…
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Hi,
I'm reinstalling cactus due to conflict in the environment.
I recompiled the `kyoto` libraries. Now what I did was
```
git clone https://github.com/ComparativeGenomicsToolkit/cactus.git
c…
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From https://pubmed.ncbi.nlm.nih.gov/33419460/
change silencing by RNA-directed DNA methylation -> gene silencing by siRNA-directed DNA methylation
change retrotransposon silencing by RNA-directe…