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### The following items are considered "**must-haves**" for being able to submit HCA prod datasets to ENA, BioStudies, and BioSamples prod archives.
1. Release date (ENA) - The release date for all…
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Submitting to GenBank requires converting a GFF file to a Sequin TBL file, which is then converted ASN.1 using `tbl2asn`. I have searched, and I have not found a good (or any, really) converter from G…
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I am having issues with getting the basic examples of pasteTaxID to work, but if I use a previous version the code works fine. The current version will obtain taxIDs but simply place them in a separat…
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A reviewer of the cilia GO ontology manuscript has requested an additional component term as part of the bacterial flagellum. @paolaroncaglia, @JohnvanDam, and I need to work on this promptly to meet…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/abrionne/ViSEAGO
Confirm the following by editing…
ghost updated
4 years ago
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I am helping a person from the NCBI to submit AIRR compliant data and he reported the following issue to me through email.
> Hi Ahmed,
>
> I’m trying to use the web-based MiAIRR metadata tool to…
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Hi there
I managed to use funannotate train and predict, and now wanted to run funannotate update, but it fails with this error message:
Traceback (most recent call last):
File "/opt/funnotat…
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Figure out what work is required to generic BioSample submission from CEDAR.
BioSample package submission is the key.
https://www.ncbi.nlm.nih.gov/biosample/docs/packages/
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Hello,
I've assembled two bacterial genomes sequenced using Nanopore with Canu v1.5 on MacOS using the default settings and an estimated genome size of 2.5 mb. The assemblies have always finished …
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Actual: description and other fields are empty
Expected: fields should be populated. The service returns them, as the screenshot proves.
After switching to the details page for a different p…