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$ nextflow run main.nf -profile docker,test_small -resume
N E X T F L O W ~ version 24.04.1
ERROR ~ Unknown method invocation `makeComplement` on _parse_closure5 type
Seems to be conn…
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**ERROR**
When running test dataset, I encountered the following error message:
```shell
Oct-01 20:44:22.606 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected conditio…
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### Description of feature
I have tried to run with one sample. It seems Taxonomy classification (GTDB-Tk) didn't work. Could you please advise whether we need to download any database?
Thanks a l…
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seems like there are edge cases where some channels might not be producing output required for the sample and custom analysis reports Nextflow pipeline processes to run
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### Description of the bug
> while running the Sarek 3.3.1 pre-processing step on a tumor-normal pair, the pipeline completed successfully, but it only generated the bam file for the normal sample
…
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Hello,
Thank you for developing this pipeline.
I run the pipeline on a linux HPC system with the following input using -profile conda:
```
nextflow run WarrenLab/hic-scaffolding-nf \
-p…
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**Related To**
- [x] Bactopia
- [ ] Bactopia Tools
**Is this related to a problem?**
I want to test how the different polishing methods influence my dragonflye assembly and have struggle to in…
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I was trying to run this pipeline as described, using the Docker container, but get this error:
```
$ ./nextflow run cbcrg/piper-nf -with-docker
N E X T F L O W ~ version 0.26.4
Launching `cbc…
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## Bug report
If a nextflow pipeline is launched with a very long command, and it's configured to send the automatic "workflow completed" email, the email will be garbled.
This email will appea…
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Hi!
a potentially interesting feature would also be the possibility to have a "local executor", e.g. a plain machine with required tools / software installed to run the workflow via tower on. In so…