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From branch 36 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+Orf10:P10S+S:F456L
Query: T22928C,C26753T,C18894T,-G24872T,-A532G
No. of seqs: 50 (Australia 1 Brazil 34 …
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### **Description** (Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1655)
**Sub-lineage of:** KP.3.1
**Earliest sequence:** 2024-6-8, USA, Colorado – EPI_ISL_192177…
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**Defining Mutations:** **`LB.1.2.2`** > `C23029T(S:Y489Y)` >` C27509T(ORF7a:T39I)` > `T22928G(S:F456V,` _`or F>L456V/C22928G),`_`C27513T`
**Query:** `G19669A, T22928G`
**Earliest seq:** 2024-08-04 …
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Needing updates: - staphb/artic from 1.2.4-1.12.0 to 1.2.4 - staphb/bwa from 0.7.17 to 0.7.18 - staphb/freyja from 1.5.1-07_02_2024-01-27-2024-07-09 to 1.5.1 - staphb/freyja from 1.5.1-07_02_2024-01-2…
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I noticed that every time [augur](https://github.com/nextstrain/augur/blob/master/.github/workflows/ci.yaml) and [auspice](https://github.com/nextstrain/auspice/blob/master/scripts/rebuild-docker-imag…
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From branch 58 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C16269A+C12781T+S:F456L
Query: G16269A,C12781T,T22928C,G22599C
No. of seqs: 12 (Canada 3 UK 1 USA 8)
Fir…
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Dear nexstrain team
I am trying to reproduce the TB tutorial, I wanted to visualize tb.json within the auspice folder. I tried to visualize it by using auspice conda env
**Current Behavior** …
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### Current Behavior
When setting `versioned=false` on ListResources, the resources entries are truncated.
### Expected behavior
Resource entries should not be truncated.
### How…
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Doc updates such as #1523 are tedious and prone to human error. It would be good if they can be auto-generated.
API docs can already be auto-generated, https://github.com/nextstrain/augur/pull/1525…
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Sub-lineage of:XDR.1
Earliest sequence:2024-06-06|Brazil|EPI_ISL_19284486
Most recent sequence:2024-07-09|USA|
Countries circulating:Brazil(1), Switzerland(1), USA(1)
Sequences:3
[UShER Tree](h…