-
@julia326 commented on [Thu Apr 06 2017](https://github.com/hammerlab/vaxrank/issues/125)
See the tesla code for what generates this error; basically, this variant's predicted effect has an `aa_mutat…
-
The ProteomicsLFQ tool performs protein inference and FDR filtering of peptide/protein IDs (before quantification). It would be helpful to have an optional output (idXML file) of the IDs after these s…
-
Hello,
I am trying to run a protein-peptide system. I was able to run tutorial without any problem.
When i am running my own complex, i am getting the following error;
![Screenshot from 2023-…
-
Hi!
Thanks for such a wonderful package.
I have a question of the function blosumIndices. After inputting a peptide sequence, I would get 10 values named Blosum1-10. What's the meaning of these v…
-
Hi Sarah,
Thank you for the content and tutorial you have provided on this page. I am new to biological NMR and I got here from the paper on _Magnetic Resonance_. I am trying to build a cyclic pept…
-
Synapter needs a method to transfer ids from 2DRP runs.
Before the actual transfer synapter needs to tell the user how to mix fractions in order to achieve highest orthogonality between 1st and 2nd d…
-
MBR attempts to map identifications from one run onto peaks in another run. This is incompatible with the multiprotease search because it does not make sense to map IDs from one protease onto another …
-
Hi,
There seems to be an issue with numbering of amino acids in MS2 scans on GUI.
For e.g – Take peptide 198-203. The sequence is EVMIMK and mentioned correctly in table.
It is wrong if you look …
-
In HDMSE fragments are associated with precursors based on similarity of rt and dt. So there is a question: why if we do 3D grid search which has these dimensions in it, we can still increase identifi…
-
From #11255
@vanaukenk raises these important points for secretion - we need to clarify:
Wrt the term definition, what are the key things we want to capture?
That the secretion is regulate…