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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/npcooley/SynExtend
Confirm the following by editi…
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As the title suggests, if new data (e.g. genes) are loaded when the micro-synteny viewer's GoldenLayout tab isn't the active one in its stack, then the viewer fails to draw correctly. This is probably…
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I ran chromatiblock on a simple dataset and it worked great, however when I added in more genomes, order, and gene annotations as per the advanced example, I get the following error:
./chromatibloc…
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Currently there is a raw bpToPx that takes a genome coordinate and turns it into a pixel offset for drawing the squiggles/polygons
This is only working for when there is a single refName
When th…
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Previously each viewer had a context menu that did general viewer things (download data, save image, etc) and viewer specific things, e.g. filter/order micro-synteny tracks. This should be reimplement…
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I dont know what happen always stuck here.
> [20:33:39] INFO: Reading contigs file
[20:33:52] INFO: Detecting chimeric adjacencies
[20:35:05] INFO: Stage "10000"
[20:35:05] INFO: Removing chimer…
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Hello @fenderglass ,
I am getting the below error message while running Ragout with HAL option. Even the solution #18 (removed block size 5000 removed from ragout/shared/config.py) also didnt work…
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Is there any to replace connected curves with straight lines for the karyotype .pdf results, the curves looks very nice, but i am trying seveal genomes, the curves make pictures look confusing.Thanks …
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Previously the viewers reacted to user interactions happening in other viewers (perhaps in another instance of the GCV) via an event bus and a broadcast channel. This behavior should be reimplemented.…