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Hi there,
I follow the vignette for bridge integration: https://satijalab.org/seurat/articles/bridge_integration_vignette.html using my ATAC dataset as query.
I encountered an error while runnin…
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**Dataset/group this task is for:**
**[ingest](https://contribute.data.humancellatlas.org/projects/detail?uuid=005d611a-14d5-4fbf-846e-571a1f874f70)**
**New 2nd submission:** https://docs.google.com/…
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Hi,
When running ananse influence (ananse newest version) I get a recursion error. I initially thought that I got the error, because of some of the new changes that were made in the influence.py f…
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Hello,
I am having trouble running taiji (v1.2.1.3) on some human RNAseq/ATACseq data which ends with this error:
```
[ERROR][07-29 18:51] ^[[0m^[[0m^[[31mRNA_Convert_ID_To_Name(deb6..) Failed:…
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## **Describe the bug**
Hi ENCODE, I am trying to run v1.7.0 of the ENCODE pipeline because this is the version we have frozen to use for MoTrPAC. I am getting an error that I believe is related to…
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This issue is a continuation somehow #72
I am showing an example in which we have snps with a prob_col value higher than the threshold but echolocatoR fails in assigning CS and PP to SNPs
acarras…
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Hi Seurat team,
This error occured on the step **Identifying anchors between scRNA-seq and scATAC-seq datasets** when following the guide [**Integrating scRNA-seq and scATAC-seq d…
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Hi, QSong!
I have some questions about the topic "Transfering labels across omics" mentioned in the paper. I can't find any code related to this topic in this repository, including Batch mixing…
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Hi,
In Multiome data which data modality would you recommend to use for the inference of metacells? RNA or ATAC?
I'm asking because in this [tutorial](https://github.com/dpeerlab/SEACells/blob/mai…
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Hi,
When I ran `CreateFragmentObject` on Jupyter notebook, the kernel dies, even when I set the memory to:
`options(future.globals.maxSize = 150000 * 1024^2)` # for 150 Gb RAM
Then I tried R in…