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Hi,
I met a problem when I ran decontaMiner.sh. I just use your original databases and data(download from http://www-labgtp.na.icar.cnr.it/decontaminer/), but it said" ./Human_rna/rRNA.fasta, Human_r…
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Possible pipelines
https://www.sciencedirect.com/science/article/pii/S0145305X17300630
>o do this, contigs were passed through a series of filters which are aimed to identify and discard all trans…
sr320 updated
2 years ago
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Add a new module which interprets a configuration provided by the user in order to annotate the input, using a list of desired genes from a reference. Ideally it would:
- [x] Download the sequences…
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### Description of the question
Hi Kelvin,
I have some basic questions about how dandelion is working and trying to find the biological meaning of each step in dandelion. To do this I am asking my…
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I use the the software to construct the CRISPRCas database from the bacterial genome in the Refseq database.
But I found that some spacer sequences are not in the genome,for example(spacers/NC_015711…
wfgui updated
2 years ago
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Hi everyone,
Recently I was running the get_homolougues in a few genomes using the following command:
./get_homologues.pl -d ~/Genomes/AA -c -n 20 -X -G
Later I realized that the program wa…
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Hi,
First, many thanks for developing this tool and the nice tutorial in the wiki.
At the moment I am trying to run the JAFFAL pipeline on the demo (simulated) data but I am getting an error at th…
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Hi Felipe,
I'm trying to run some annotation but no process were complete successfully even the quick test. Here is the error from quick test:
Code in collapsible form (Click to show/hide)
`…
fetyj updated
2 years ago
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When processing a Coronavirus genome, I encountered the following error. Any hints?
```
# v-annotate.pl :: classify and annotate sequences using a model library
# VADR 1.3 (Aug 2021)
# - - - - -…
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Hi, Torsten
When I used the abricate with a my own database, meet the ERROR: "ERROR: can not find sequence data in './assembly/split_contigs/mg.u500.cdhit.contigs.part-06.fa'". The new database had 1…