-
Hi,
I'm running DemuxFastqs (fgbio 1.3.0) on paired-end dual-barcodes data and I'm unable to use the `--sample-sheet` argument.
It always ends up with the following error : `No option found with n…
-
The problem though is that I have not worked out an easy way to program them within HA.
The first problem is that for built in Integrations (custom_components) there is no equivalent to input.date_ti…
-
Hi zUMIs folks,
I am trying to troubleshoot a situation that I have ran into and would like some help.
I apologize for my long entry in advance.
Input conditions (here is what I have at hand)
…
-
Hello,
I ran Megalodon to detect methylated and hydroxymethylated sites simultaneously. I used for that the config file `res_dna_r941_min_modbases_5mC_5hmC_v001.cfg` from rerio with the following c…
-
I'm attempting to demultiplex /sequencing/iSeq/20210811_FS10000742_28_BRB11606-2909
However there is some sort of line error in the Snakefile and it crashes immediately.
-
Hello
I am starting with paired end reads demultiplexed fastqs, after merging them, aside from the R1 and R2 fastq.gz (1 each), one of the other fastq files generated was the index.fastq.gz,( so 3 …
-
Hi @MikkelSchubert !
I am looking for a sensible way to separate the adapter clipping functionality of AR from the collapsing functionality, and have run into an odd behaviour.
I am using some …
-
I am trying to demultiplex some reads that have internal barcodes inserted through restriction digest and then ligation.
I gave the full length of the bridge adapter containing the barcodes so they…
-
Hello,
I am running Megalodon and everything is working well until the aggregation step:
```
[21:05:11] Loading reference
[21:05:11] Loaded model calls canonical alphabet ACGT and modified bas…
-
I am switching from bcl2fastq to bcl-convert. In order to get and store run metrics I run `interop_summary` and `interop_index-summary` (both installed with [conda](https://anaconda.org/bioconda/illum…
BCArg updated
3 years ago