-
Hello,
First of all, thank you so much for this set of tools your lab shares. Really valuable.
I'm a "seasoned" molecular biologist, now giving my first few steps on bioinformatics. I've been re…
-
Hello,
I've been trialing Metagraph for some work on my current project. I just had a few quick questions regarding certain functions.
First, from the wiki regarding --count-width, if the value …
-
Hi,
I tested UPP for highly fragmentary protein sequences. I downloaded [BaliFam](https://github.com/rcedgar/balifam/tree/main/balifam10000) with 10.000 homologs per family and made it fragmentary. I…
-
@RaphaelRaphael ran into the following error when attempting to run `iqtree2` on his FASTA files:
```console
...
NOTE: hCoV-19/Canada/Qc-JEW-Q9231098/2020_B.1.598_2020-05-23 (identical to hCoV-19/C…
-
Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
-
This issue is a follow-up to #16.
Unfortunately the seqlogo doesn't handle this natively.
(just as a reminder for myself)
original paper: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC332411/pdf/nar00…
-
**While analysing an amino acid alignment, using ModelFinder, the IQ-2.1.3 suddenly abort reporting that a number of sequences do "not appear in the tree". This is the command used:**
iqtree2 -s 48…
-
I have had some issues with names previously, trying to concatenate multiple datasets to find UCE loci, and had mostly overcome that.
However, I am having an issue with phyluce_align_get_gblocks_tri…
-
Dear Developers,
I'm Jaspreet, a Master's student at Tel Aviv University, Israel.
I am highly interested in using the RAxML Grove database to find suitable trees for my project. I need at least 50…
-
## The need
It appears that `anvi-get-sequences-for-gene-clusters` will only output one fasta of all selected gene clusters. For many downstream workflows, one file per gene cluster is needed.
…