-
Hi,
I started testing the tool on HG002 using the "benchmark" variants in the supplementary table Supplementary Data [8](https://www.nature.com/articles/s41467-023-42531-9#MOESM11) of the paper htt…
-
**Tempe Version**: 1.2.1
**Task Name**: vardict_[pair-name]_4
**Issue**: We are experiencing failures due to hitting the wall time specifically for genome samples. We had no issues with any exom…
-
I am using deepvariant on our cluster using singularity.
I could setup singularity and get it running. My problem now is that the process is pretty slow and it takes more than a day for just one sa…
-
Hi,
I'm trying to run SigProfilerClusters on a set of VCF files. I've successfully run SigProfilerSimulator on these files with 100 simulations, and the log file is pasted below:
-------Python a…
-
Hi,
We tested +-100 RNA exome sample data with interesting output, however, also included are normal lung tissues that get an ouptut of +-35% tumor fraction.
Have you tested this and if yes, did you…
-
Hi!
I have two separate vcf files for a **tumor** sample, one for indels and another for snvs. Both have been VEP annotated and decomposed. The **indels vcf** file has different variant callers:
Var…
ne1al updated
6 months ago
-
- Please split the display format for carrier frequency and genetic prevalence. Right now they are linked so if you change it for one you change it for both. This should allow you to change one to sc…
-
Questions for meeting on Fr 28.07.23:
howto configure SampleSheet to get:
- [x] BAM, VCF small variant, VCF structural variants
- [ ] benchmark with and without DRAGEN-ML (the on-site Dragen bench…
-
example sample ran well, but when run with a pair of real data set, neusomatic failed at the last step with error:
### NeuSomatic stand-alone FAILED: Files ../example/work_standalone/NeuSomatic_stand…
-
### Description of the bug
Hi there,
I am trying to run sarek on a cluster using slurm, but keep getting the error below from a couple of tools like deepvariant and some others
I am …