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Currently, the build process depends on quirks of skyhook. To make this generally usable, we want to upload the MGI upstream file we produce to a stable location (mirror.geneontology.io), with the new…
kltm updated
7 months ago
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Reference for IBAs has changed from PMID:21873635 to GO_REF:0000033
- [x] Make new FBrf
- [x] Change mapping for P2GO load
- [x] Add mapping FBrf to GO_Ref to GAF pipeline
- [x] Obsolete PMID:21…
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Hi @dustine32
There are about 1000 new SynGO annotations on snapshot compared to 'release' ([2024-04-18/](http://release.geneontology.org/2024-04-18/index.html)). The current release already has the…
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could you make a version of the GAF file for me which also includes
1) the gene product description
2) the GO term label
it will make it much easier to review the IEAs
(I don't need every c…
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*Originally created by fsamwel (https://github.com/VNG-Realisatie/BAG-Gemeentelijke-wensen-tav-BAG-Bevragingen/issues/105):*
Conform de NL API strategie en vanwaaruit de API specificaties moet in fou…
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Closing this ticket means that @pgaudet has been provided a sufficiently final version of any example file(s) for GPAD / GPI 2.0, so that she can:
- let downstreams know that we are changing files …
kltm updated
4 months ago
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From Li's comments here: https://github.com/geneontology/go-site/issues/2043
It looks like we should add code to ontobio so that we can produce GPADs with protein subject identifiers when GAF annotat…
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Value is "pipe:[250445082]"
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To address the data issue reported here: https://github.com/geneontology/go-releases/issues/46
Kimberly sent the GAF file directly to GOC, as the WB FTP site did not get updated within the required t…
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- [x] What do we have annotated as "residue extensions"
- [ ] Curators review existing residues on catalytic activities- possibly remove?
See https://github.com/pombase/curation/issues/3729
-…