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I get the following error, bcftools on my workstation is the latest version v1.9.1
root@CNV:/home/mai/automap/AutoMap# bash /home/mai/automap/AutoMap/AutoMap_v1.2.sh
--vcf /home/mai/automap/…
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Genome-wide cell-free DNA fragmentation in patients with cancer
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6774252/
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![Screen Shot 2022-03-29 at 8 52 32 AM](https://user-images.githubusercontent.com/29547481/161312201-8eaf70a0-f3f8-4bb3-92d3-4c71a539db08.png)
Hello! i've been attempting to visualize some comparis…
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Msprime is much slower than MaCS when simulating long genomes/lots of recombination, as we've seen with the BosTau model in stdpopsim.
There may be some low-hanging fruit in making this faster as t…
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Hello,
Thank you for sharing the code for this very clever method to resolve complex regions.
Would you envisage to use this method genome-wide? I mean, not having the need of a parent read next t…
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Hi,
When I run:
`download_genomes.sh "Methanosarcina"`
It gives me:
`find: refseq/bacteria: No such file or directory`
Any tips on downloading from an archaeal genus?
Many thanks!
Gao…
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comparison table
https://docs.google.com/spreadsheets/d/1Or-zrbFAq2xl4iDNIJPJX0I9DWLtpa3m7gqDrFw-NT8/edit#gid=803995851
sr320 updated
5 years ago
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When you create an parameter file for an animation using flam3-genome with the following command line
env sequence=sheep-in.flam3 nframes=320 loops=0 flam3-genome > sheep-out.flam3
and sheep-in.…
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Hello,
In my attempts to use ViralConsensus on the command line, I'm having trouble with certain reference fastas. When I provide a reference of 4153 nt, a consensus fasta is outputted properly. W…
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Hello,
I am encountering several issues trying to launch braker3 on my server.
I have installed BRAKER3 using conda.
I have followed the instructions and I am trying to run the command on the tes…