mquinodo AutoMap issues

mquinodo / AutoMap

Tool to find regions of homozygosity (ROHs) from sequencing data.

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issues

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How small the minimum ROH size threshold can be without losing reliability?

#27 ManavalanG opened 4 days ago
0
change v1.2 to v1.3

#26 abrusell closed 1 week ago
1
issues with bcftools version.

#25 mxiong2 opened 3 months ago
1
Less than 10,000 variants (0 detected variants) with AD (or AO) and DP available

#24 wangDanHua1 closed 1 month ago
3
getting bcftools error when running AutoMap_v1.2.sh script on singularity container

#23 Arth032 closed 1 month ago
2
Empty output for the test case

#22 geocarvalho opened 10 months ago
1
Error

#21 ramikheireddine closed 10 months ago
1
Help in running automap

#20 VigneshArunachalam97 closed 1 year ago
0
Unable to find locale file in common_analysis.sh

#19 medjpou closed 1 year ago
1
Why some of the ROH are not detected?

#18 Azjer2014 closed 1 year ago
3
Can we get the list of variants in the result?

#17 DhongiBoi closed 1 year ago
1
--vcflist option not available in v1.2

#16 skose82 closed 1 year ago
1
Changes temporary log file's name and path

#15 ManavalanG closed 1 year ago
1
common for a family

#14 mushalallam closed 2 years ago
7
AutoMap_v1.2.sh: line 326: [: : integer expression expected

#13 tugcebb closed 2 years ago
2
How to calculate the fraction of the exome in ROH

#12 salonso65 closed 2 years ago
2
can it be used on non-human data?

#11 FatihSarigol closed 2 years ago
3
Small misprint in AutoMap v1.2.0 TSV output footer

#10 gtollefson closed 2 years ago
1
PASS filtering

#9 snashraf closed 2 years ago
1
Can it be used on RNA-seq data?

#8 kvn95ss closed 2 years ago
1
output.tsv not well sorted

#7 Jjuj66 closed 3 years ago
1
ERROR : AutoMap_v1.0.sh file does not exists (while using v1.2)

#6 Jjuj66 closed 3 years ago
2
multi vcf: how to use common flag and/or, provide list of VCFs with --common

#5 complexgenome closed 3 years ago
5
## ERROR: Less than 10,000 variants (0 detected variants) with AD and DP available. Exit.

#4 mvheetve closed 3 years ago
1
--common error

#3 abrusell closed 3 years ago
2
--genome error when using mutiple vcf files

#2 deb0612 closed 3 years ago
1
Create CODE_OF_CONDUCT.md

#1 mquinodo closed 4 years ago
0