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```console
(base) omic@omic-Precision-7920-Tower:~/funig8$ nextflow run fmalmeida/mpgap --output _ASSEMBLY --max_cpus 5 --skip_spades --input "samplesheet.yml" --unicycler_additional_parame…
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Hi,
I'm try to run a first test with my own data. It's about 3 very closely related genomes, already aligned with Cactus. I'm preparing the configuration file following the instruction. I have a bu…
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Currently the recombination masks in humans on hg37, but the genome is hg38. A simple liftover using the UCSC browser should cover us here I reckon
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### Before opening an issue, please:
Version: 16.17.1
**Describe the bug**
I get an incorrect error from datasets CLI:
```bash
$ datasets download virus genome taxon 186538 --…
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Currently we don't differentiate between genes and proteins, we just lump them all under gene. However, most go annotation is at the protein level. When we have a go annotation, and we ask quickgo …
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## Background
`GenBank` format ("GenBank Flat File Format") is a genomic format that describes nucleotide sequences and their protein translations. `GenBank` file (`.genbank`, `.gb`, `.gbk`) is a s…
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I would like to express my gratitude to the author for developing this annotation tool for SV (Structural Variant) files in Annotsv format. It has made it convenient for me to filter and analyze. Rece…
lpsyy updated
3 months ago
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Hi,
I've started to use the web app to share genome browser sessions with colleagues. Overall it works great, however I've found myself missing a few features from the desktop version and was wonde…
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### Overview
In this homework, we are going to learn some Python skills that you might use throughout this project. The first things you will learn about are:
- Commenting and uncommenting lines…
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Experiment Type:
RNA-Seq
Sequencing of total cellular RNA
Workflow Management:
Bash/SLURM
Scripting and job scheduling
Software Stack:
FastQC
MultiQC
STAR
RSEM
samtools
DESeq2
What …