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Mainly MIP VCFs and their indexes are being saved in Housekeeper with the same tags:
We have in Hermes specific tags for index files that are currently not used for MIP:
https://github.com/Cli…
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Thanks for providing such an excellent tool.I have a question for you
I have some RNA-seq data of different genotype materials. They are divided into treatment groups and control groups, but no repli…
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I did some poking around with respect to HCV, GlyGen, and the NCBI Taxonomy:
* HCV-H glycans are from dataset GLY_000335, which provides the uniprot
tax id as taxid 63746. This is NOT a species, s…
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Hi,
I'm having a bit of a strain to compile SHAPEIT4 and everything I have tried so far always ends up with an error.
The server I'm working on only has GCC 4.9.2 so I installed GCC 7.1.0 in a l…
Asutu updated
4 years ago
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Hi YinLiLin
I wonder if I can fit the dominance matrix by using the kinship matrix by KAML() function? Can KAML make use of both gfile and kinship at the same time? If yes, is that way can calculat…
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I've been trying to run BayesTyper on a VCF file ([uploaded here](https://gist.github.com/Parsoa/1e5407b6f45ab54a6736f7d8a234fa1f) which is basically the merged set of calls from HG00514 and HG00733 f…
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Data sources use a variety of modeling elements to describe the collection of genetic elements that together produce a particular phenotype or contribute to disease progression.
We'd like one abst…
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Hi, I was curious about the suggested workflow for WHAMG on ~1K genomes. My assumption is that this is what you would want to do:
1) Run WHAMG individually on all genomes -> many vcfs
2) Filtering…
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The following are the items raised so far.
- [ ] select a variant by rsid or index within the region selected
- [ ] getindex function
- [ ] major/minor alleles for haplotypes
- [x] ref allele d…
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**Current Behavior**
When I select "color by">"Genotype" and then start entering a list of sites, e.g. select "S" then `95,142` Auspice becomes sluggish as soon as I've typed the first comma. Auspi…