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This may be beyond the purview of universalmotif, but I wanted to float this
idea with you because, to me, universalmotif has done a beautiful job of
standardizing the process of manipulating motifs…
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Hello,
I just wanted to let you know that nanopolish extract cannot extract fast5 file pathway information to incorporate into read headers. The authors of the program have basically noted its obs…
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When I performed motif footprinting analysis from the signac footprinting vignette in my own dataset, the motif object set in seurat was 0x0 and there occur an error in functon PlotFootprint: Error …
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What is the reason to get a slightly different TF ranking on motif analysis when I run the code at different times?
Here are the steps before TF ranking at different runs:
1. loadArchRProject
2.…
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While running tfi.scan I am running into the following error which seems to be related to (https://kb.iu.edu/d/aqsj). Any ideas what could be causing this? I am using human, hg38, reference genome and…
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https://mp.weixin.qq.com/s/eAfkhX0SJu1lytZeXdsh0Q
ixxmu updated
3 years ago
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**Submitting author:** @johncwok (Corentin Nelias)
**Repository:** https://github.com/johncwok/CategoricalTimeSeries.jl
**Version:** v1.1.4
**Editor:** @jbytecode
**Reviewer:** @bkamins, @felixcre…
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Hello,
I am trying to use of the `--mod-binary-threshold` option in Megalodon's mod base aggregation.
It is described as (probability of modified/canonical base) and has a default value of 0.75. M…
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Add non-HTML file output of major analysis results
- Above threshold Genes/isoforms
- significantly enriched GO terms
- prosite motifs per isoform
For now, it is probably easiest to output an On…
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Hi Tim,
Thanks for your excellent program for scATAC-seq analysis. Here I have a question about the motif analysis with Signac. I focus on cattle and there are 4 samples total. Below is the full code…