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Hi Sean,
I've been using the Protein Metrics on Google Colab for the past few days, but for some reason I keep getting errors when I try to calculate scores using ESA-MSA sampler-generated sequence…
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_Issue [JP-3711](https://jira.stsci.edu/browse/JP-3711) was created on JIRA by [Tyler Pauly](https://jira.stsci.edu/secure/ViewProfile.jspa?name=tpauly):_
Routine comparison between keyword diction…
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urn:cts:greekLit:tlg5026.msA.hmt:18.120@Ψ[1]
The Ψ is wrapped in a title element with a ref element as well for the 23rd book of the Iliad. MOM should skip over these single letters when they are wr…
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https://github.com/brouwern/compbio2021/blob/4fc22d26cd66119a177fd9572bd409ffa989216d/KEY-MSA-walkthrough-shroom.Rmd#L203
I understand that we almost universally use the Fasta format for our nuclei…
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(sorry for german link (use google translate))
http://www.leipzig-jagd.de/Waffenzubehoer/Gehoerschutz/MSA-Supreme-Pro-aktiver-Gehoerschutz::1157.html
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pro-active ear protection is simply nothing …
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Per request from KW from QI and Appeals there have been appeals and accuracy in processing MSA on cases that have no SSI or have Shelter Needy.
There is a need to asses how many of these cases are…
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Hello,
I was wondering if there was an alignment file for the orthologues hidden within the results folder.
Also, is there a way to add the species name to each header of the orthologues fast…
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Hi, thanks for the great repo. I'm interested in generating sequences with bmDCA for protein families that have around ~20k samples with ~400-600 total aligned positions (and no position with more tha…
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I would like to extract single representation from AlphaFold prediction. I tried to use masked_msa (not sure if it the correct field) from result_model_1.pkl . I think what I should get is something …
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So I was having issues with alphafold while builoding the docker image and decided to try this out i was able to follow all the steps but still can not run alphafold.
bash run_alphafold.sh -d /medi…