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In [`ca3f613`](https://github.com/BioImage-Archive/upptime/commit/ca3f613169306a0dc0653d2a562af5e904474ef3
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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In [`f36bebd`](https://github.com/BioImage-Archive/upptime/commit/f36bebd07bd15c339d79e7d89505fd8cbab0c394
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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Hi there,
I'm registering 7 tiffs following the examples given in the readthedocs, but the script is failing at the warp and save slides step.
It's failing in both warp_and_save_slides and warp_…
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In [`f2d3ea1`](https://github.com/BioImage-Archive/upptime/commit/f2d3ea1f91e97d93a3b14ac134fb894733db52b5
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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In [`e90303e`](https://github.com/BioImage-Archive/upptime/commit/e90303e61857a4498c279852979ed5f9227b7e4e
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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In [`d465895`](https://github.com/BioImage-Archive/upptime/commit/d465895f71e0784ddbc2da54874e0342d6481412
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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In [`342c7ee`](https://github.com/BioImage-Archive/upptime/commit/342c7eebdf3ba7638adf860577258ceea6d830b5
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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In [`f47a8d2`](https://github.com/BioImage-Archive/upptime/commit/f47a8d2095d3c6433440d9f483c3340b67dd9ecb
), S-BIAD531 (https://www.ebi.ac.uk/biostudies/files/S-BIAD531/Zebrafish_ML_Archive/outputs/2…
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The HuBMAP MIBI metadata spec contains the physical size for pixels, in the fields
* `resolution_x_value`
* `resolution_x_unit`
and similar for dimension `y`.
Read these physical sizes from HuBM…
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Need to evaluate a couple tools to do the conversion.
- Get all LM image file formats and evaluate the tools once on all of them instead of each time a new file format is requested.
- a front e…