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## Context:
I want to search for structure matches ONLY for "representative" proteins in the proteome of my species of interest, and I would rather build the searchable database using just these IDs,…
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Dear @qichao1984,
Thanks heaps for this DB.
We observed the following when analyzing our samples.
We have 10 assemblies (*.fa files) with different numbers of contigs.
I ran the NcyPerl.pl on …
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Today's monthly SARS-CoV-2 Helicase FBDD progress meeting will be taking place on Zoom. See link below to join. The video recording of today's meeting will be uploaded here shortly thereafter.
Joi…
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Hello,
I am running the following command
`` funannotate annotate --gff Slycopersicum_225_iTAGv2.3.gene_exons.gff3 --fasta Slycopersicum_225_iTAGv2.40.fa -s 'Solanum lycopersicum' -o Sly --cpu 12 …
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Dear Braker3 authors,
I would like to use the compute_accuracies.sh tool provided in Braker suite to check my annotation accuraty agaisnt a reference one.
I checked Braker3 and Galba publications…
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Hi,
Thanks for developing this really interesting methodology. Would it possible to give us a short tutorial on how to use one's own single cell RNA seq data for protein prediction?
Current demos …
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Hello, I have run the TRUST4 based on our bulk RNAseq cohort (PE150bp, ribo-zero), where fastq is input, but the results are not consistent with other immune metrics (GEP based). I want to optimize th…
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Dear all,
We plan to remove the GO_REL extension 'exists_during'. There are a lot of annotations to this term. The suggestion is to change the annotations from
`CC exists_during BP`
to `BP occu…
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Hi there,
Relatively new here!
I encountered this error while I was processing .raw files acquired on thermo QE HF for phosphoproteomics.
Note: DIA-NN works perfectly fine for normal proteomi…
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Hi,
I am trying to predict ligand positions for a protein with around 700 residues, but get the error below:
XlaRuntimeError: RESOURCE_EXHAUSTED: Out of memory while trying to allocate 1760845098…