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We are trying to integrate pangolin in a variant calling workflow for SARS-CoV-2 (https://github.com/TRON-Bioinformatics/covigator-ngs-pipeline/pull/2). This workflow depends on a recent version of Bi…
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## Update 2021-12-06
To join the nf-core community, please visit https://nf-co.re/join
The most important step is to sign up to the nf-core Slack, which is the hub of the community.
Once ther…
ewels updated
2 years ago
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Hi there, I am trying to learn how to implement & run DROP by re-producing results from the 100 Geuvadis dataset. However, I keep running into an error with one of the steps for the Aberrant Expressio…
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Hi @Mxrcon,
The following module is raising an error while running the pipeline at the moment for some reason, if possible could you please test this module in isolation using `stubs`?
https://g…
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Everybody is welcome to contribute a package. Simply reply to this issue and you will be added to the bioconda team.
**Edit:** *After you post here, we will email you an invitation through github t…
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https://mp.weixin.qq.com/s/bjDDVSAwf7-oDndaT_qQCQ
ixxmu updated
2 years ago
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**Describe the bug**
SmartPeakCLI expects its input files and data files to be contained in the same execution directory. However, the bioinformatics pipeline in my organization is structured so that…
buijt updated
2 years ago
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https://github.com/McGranahanLab/TcellExTRECT/blob/c155d9fd1082621aae8eedaa2a15f4cb5900c524/R/getCovFromBam.R#L23-L25
The pipeline we use creates file names such as:
```
-rw-rw---- 1 cew562 hm8…
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### Abstract
[RCy3](https://bioconductor.org/packages/release/bioc/html/RCy3.html) is a Bioconductor package that operates [Cytoscape](https://cytoscape.org/) from R. In this workshop, you will lea…
kozo2 updated
2 years ago
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