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Blender relies on PSMs shared between multiple search engines to construct and apply its FDR scoring model, and it currently uses Comet, XTandem with k-scoring, and MS-GF+.
For best performance, th…
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We are using moFF on a larger dataset (27 label-free runs) and it takes a very long time (about 40h), even with setting for 16 threads and 150GB RAM.
Are there any parameter settings that can shor…
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Hi, I was trying to make the timecourse figure using following command:
`$ python plot_timecourse.py argR.settings.txt`
But seems like some file named 'haplotype_timecourse.txt' is missing in da…
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Hello, I used hiccups --cpu to call loops and it completed without error producing all of the expected files except the merged_loops list. I ran with
`java -Djava.awt.headless=true -jar juicer_tool…
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Warning: scores is null for index 0 in scan 1448
Warning: scores is null for index 0 in scan 1448
Warning: scores is null for index 0 in scan 1479
Warning: scores is null for index 0 in scan …
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Hi,
How can we figure out the over weight problem for crosslinking data? i noticed if there are lots of crosslinking restraints for one sequence, the final models looks like over-constrained and …
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**Describe the bug**
I was running step2-3 from the zeisal et al. tutorial and having this error.
1. Command run when the error occurred:
```python
```
2. Error encountered:
```python
…
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Hello!
I'm trying to run a relatively simple model as follows:
`ex1
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**Update metadata:**
https://docs.google.com/spreadsheets/d/1QCeAF4yQG4bhZSGPQwwVBj_XF7ADY_2mK5xivAIfHsc/edit#gid=4776337
**Details of metric (publication, GitHub):**
rather suited for celltype c…
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Dear Dr. Ha,
I would like to know how did you process the output file for differential APA genes? I'm slightly confused by your paper so I wish to know which method did you use? Is there any codes …