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Hi!
Thank you for developing these great tools!
I was wondering what would be the recommended way to convert pat files from one genome to another? As far as I am aware there is no designated functio…
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Hi,
I run BRAKER3 to annotate a new reference genome I had assembled. I used proteome from the closest species I found as a training set. BRAKER call was
**braker.pl --gff3 --threads=12 --species=Ve…
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add synteny to hg38 and reference gene track if possible too
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Hello,
I'm getting an error when trying to run croo after a successful run of the encode rna-seq-pipeline. My version of croo is 0.6.0
The command I ran is
`croo /storage/aadams/scripts/encode…
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Hello,
I am encountering several issues trying to launch braker3 on my server.
I have installed BRAKER3 using conda.
I have followed the instructions and I am trying to run the command on the tes…
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Hi,
Thank you for a great tool.
I gave it a try with several genomes.
One of the genomes was predicted to be "not intolerant" for oxygen, but I cannot find how to interpret "not intolerant" f…
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### Description of the bug
Hello,
Hope you are doing well! I'm wondering how to take advantage of the transcript length feature (https://github.com/nf-core/differentialabundance/pull/203) when us…
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1) Add motion control
2) QC itself with projector
3) Add misc
4) Increase Misc's dimension to 4x1x1
5) Activate motion control once
6) Activate anything on MISC and it will qc projector on motion…
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Hi,
I ran VIBRANT (version 1.2.1) on two bacterial genome sequences known to have phages as predicted with Virsorter2 and other tools, but the output from VIBRANT shows no phages. How do I troubles…
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![image](https://github.com/cov-lineages/pango-designation/assets/78371872/60846153-2315-43e6-bf81-f7a268df8d76)
tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_417…