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**Current Behavior**
When I select "color by">"Genotype" and then start entering a list of sites, e.g. select "S" then `95,142` Auspice becomes sluggish as soon as I've typed the first comma. Auspi…
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In the future, I want to map the resequencing data of different species of onto my map genome.Then the group vcf with good classification is used to carry out the process of vgmpmap
I wonder if this …
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Hi,
I am having an issue with the extraction of the RD and AD genotype tags in my input VCF file to the 'gt_ref_depths' and 'gt_alt_depths' columns of my gemini database. I am using gemini (v0.8.0) o…
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OMIM: API that searches diseases that categories it into two categories of genotype and phenotype as well as the clinic synopsis.
MGI: Rat heart mutation data
HPO: API that returns heart mutation de…
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Hi, Dr. Liu. I am running Gene-PAV-GWAS. All files need to be generated manually. Does the order of the rows of the ‘Numeric.txt’ and ‘Map.txt’ files need to be consistent? and does the order of the c…
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Hi,
Thank you for creating this software.
I encountered an issue when trying to use this software.
I am attempting to use regenie to correct case-control imbalance in a dataset that combines tw…
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- better description of creation of genotype frequency files.
- add description of how to run merge step
- fix `${PWD}` case in readme
- consider handling of missing files/samples
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First of all, your tutorial is great. It gave me great insights about the inner working of DESeq2.
However, when I tried to follow the tutorial but did not get the result expected when I used the …
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I am getting memory error when generating LDscores;
./ldsc.py --bfile "/dataE/AWIGenGWAS/shared/imputed_data_plink/all_imputed_map_qc" --chunk-size 500000 --l2 --ld-wind-cm 1 --out Awi-gen-LDscore…
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I'm running into an issue with:
> (phyluce) bash-4.2$ phyluce_snp_convert_vcf_to_structure --input filtered_unlinked.recode.vcf --output filtered_unlinked_structure.str
> Working.Traceback (most …