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**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.4/docs/FAQ.md**: yes
**Describe the issue:**
I am running DeepVariant on a custom genome assembly using a hybrid of pacbio…
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Hi all,
Has anybody had problems with illumiprocessor not removing adapters and barcodes? I ran phyluce v1.7.1 straight through to the tree building step with RAxML-NG, and ran into no issues.
Th…
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This work should include write-ups on results and initial conclusions on the standards a given data must meet to be considered 'regulatory-grade'. This work will also help build use cases for DB view …
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Hi,
Thanks for developing this powerful tool. But when I processed the BAM file from the CellRanger pipeline with bamtofastq, the results didn't match the original FASTQ sequencing data. The code is …
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Hey there, Rajewsky lab!
I downloaded samples SRR17321895 to SRR17321901 (7 total) from the SRA.
I wanted to preprocess them according to the recommended way in the isoseq3 guide, as instructe…
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First, I would like to thank you for this great tool and its maintenance!
Second, I would love to better understand the differences in simulating mutations for real genomes and simulated genomes. Doe…
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(base) mas@binel229:~$ docker run --name easyfuse_container -v ~/tool/easyfuse_ref/:/ref -v ~/2021_RNA/FastqFile:/data -v ~/2021_RNA/fusion/:/output --rm -it tronbioinformatics/easyfuse:1.3.7 python /…
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the deep variant wrapper dv_call_variants.py crushing when installed using conda.
**Setup**
- Ubuntu 20.04:
- DeepVariant version - 1.4.0:
- Installation method - Conda
- Type of data -…
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**Short name**
InnateLymphoidCells
**[Ingest](https://contribute.data.humancellatlas.org/projects/detail?uuid=f4d011ce-d1f5-48a4-ab61-ae14176e3a6e)**
**Publication**
Subsets of ILC3−ILC1-like cells g…
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Hello,
I am trying to run sortmerna 4.3.6 on paired-end fasta files from Illumina sequencing with the following command (in a slurm script):
`sortmerna --ref /softs/contrib/apps/anaconda/3/envs/s…