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Hi Dorado team,
I have two questions about the mRNA modifications in the new dorado release 0.7
1. For the pseU modification, is it for pseudouridine or N1-methylpseudouridine?
2. Is it pos…
yul96 updated
3 months ago
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Issue linked to #76 and testing the `riboviz.tools.upgrade_config_file` tool from riboviz 2.1.
I used the command `python -m riboviz.tools.upgrade_config_file -i ../example-datasets/fungi/saccharom…
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Hi, I downloaded ovarian cancer RNA-seq data, but find out not all raw count data are integers, can someone explain why?
```
query
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**Version**
I am using funannotate 1.88, with singularity
**Describe the bug**
Funannotate update crashes on "/venv/opt/pasa-2.4.1/scripts/cDNA_annotation_comparer.dbi " error reading input file
…
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Hi
I am having problems getting Panache to run.
I installed Docker and Docker compose and then ran bash ./start.sh
I get the following error:
```
## Populating apt-get cache...
+ apt-get…
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Anticodons in bioperl are quoted when they line wrap, biopython does not. This inconsistency causes files output by biopython to fail to parse by some applications.
https://github.com/biopython/bio…
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Hello, I want to make pcr primers for a several different genomes to make PCR in one pool. Maybe I am a little bit stupid, but I dont understand, is there a way how to do it with your program? Will NG…
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### Tripal Version
4.x HEAD
### Drupal Version
10.2.4
### PostgreSQL Version
15.6 (Debian 15.6-0+deb12u1)
### PHP Version
8.2.7
### General Description
I am setting up a Tri…
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#### Introduction
I am a new PhD Student at the Walter and Eliza Hall institute in Melbourne, Australia. My project is based around methods and tools for the analysis of DNA methylation in long reads…
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Hi everyone!
I’m using the arrow command **arrow annotations load_gff3** to load a full GFF3 into an annotation track, but nothing's happening.
**The version of my plugin:**
apollo 4.2.13
**…