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**Describe the issue**
Pipeline fails at HaplotypeCallerGVCF
```
Error executing process > 'single_sample_wgs:run_HaplotypeCallerGVCF_GATK (30)'
Caused by:
Process `single_sample_wgs:run…
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## Tasks
1. all PCGs BLAST all-vs-all search - diamond.py
2. gene sets construction
3. real alignments to respective sample contigs specific to gene coordinates
4. module detection of coverage-c…
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**Is your feature request related to a problem? Please describe.**
Hello. I am a developer of Bitextor (https://github.com/bitextor/bitextor), which is based on Snakemake, and we are having issues ru…
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Hi,
I am trying to compute the Cistarget step of pyscenic after obtaining meta cells with the metacell2 pipeline and then the GRN with arboreta package and saved in a tsv file. However, I keep obtain…
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**Describe the issue**
Align-DNA error when running metapipeline-DNA when testing with a WGS bam file. Erro seems to be during the Mark Duplicates function. Basing this just on the error which refers…
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## Problem
A new parameter --task stat has been added to rMATS. This will allow us to do statistics separately from calculating the PSI values.
## Solution
Sangram checked the option `--task` for…
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I have created a simple assembly pipeline that downloads _Streptococcus agalactiae_ reads from SRA by providing an accession number and processes reads in order to get assemblies that have passed cert…
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Hi,
Congratulations for the 1.0.0 release! I'm testing it with a QC HeLa sample but I got some errors. Could you help me? Thanks!
``` nextflow
N E X T F L O W ~ version 20.07.1
Launching `n…
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I've thought that this can cause problem generating report, I think it's should be er…
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Dear Devs,
I am running NextDenovo (v2.5.0) on a 2.4Gb mammalian genome using Nanopore data in Docker with Ubuntu 20.04.2 LTS and Python 3.10.6 in a Nextflow pipeline (allocated cpus = 16, memory =…