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@#Hi everyone,
This is my first time using searchGUI/peptide shaker, and everthing has been working fine, exept now when I am trying to run my first search, it's been downloading gene/GO Mappings …
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Hi,
i am trying to upgrade SearchguiGUIinstallation on our HPC system since we need to analyse SILAC MS experiments. WQe have alot of files to analyse, around 500. Tested on one MS file before lauchi…
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tool name:idconvert
short description: A converter between pepXML and mzIdentML formats for peptide identifications from tandem mass spectrometry. Developed by the ProteoWizard team.
URL:http://proteo…
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I did removed all the comet output from the search results. I still have 3 search engines MSGF, Myrimatch and Xtandem. I am still getting an peptide-shaker import error. I did checked the input files …
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I am importing search results and getting the following warnings.
Fri Mar 03 12:13:12 CET 2017 Warning: More than 75% of the PSMs did not pass the import filters.
Please verify that your p…
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Hey folks,
having some issues with MSGF+, mainly its rather low ID rate compared to the others (X!Ta, Ms Amanda, Comet). So in my test data sets from today around 10% instead of 20% in the others. th…
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Hello, I have a project with 11 mgf files searched with 4 search engines run by SearchGUI. I am not able to load those results in peptide shaker. Below is the Error log I copied out of the Bug Report …
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currently the "special" amino acid "X" has a mass of zero which leads to problems when used as an internal residue since OpenMS assumes that amino acids get hydrolized and loose the mass of H2O when b…
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Hejhej,
I have a question regarding current options in GalaxyP for **protein quantitation**, especially on **stable isotope labels** (e.g. SILAC). While there are a lot of good possibilities for pept…
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Hi,
After running SearchGUI 3.2.18 for a sample on X!Tandem, Comet, MS-GF+ and OMSSA, I tried to loaded the searchgui output folder in to PeptideShaker 1.16.9, when the following error occured:
…