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I ran on _E.faecium_ with 3 plasmids, that are in Refseq.
```
LOCUS NC_017022 2955294 bp DNA circular CON 23-MAR-2017
LOCUS NC_017032 56520 bp DNA …
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Just below the `root` there is an `unclassified` node that shall be discarded from the very beginning of the process.
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Something wierd after running get_homologues.pl for gbk files(sample_plasmids_gbk and my gbk data all get this errors), compare_cluster.pl was run to get cluster of genes. But some errors showed like …
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Hi,
I am trying to test PlaScope (verison 1.3) using [this O104:H4 assembly](https://www.ncbi.nlm.nih.gov/assembly/GCF_000299455.1) (stored as `O104H4.fasta`) and the provided database (stored in `~/…
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Hello PlasFlow,
I notice you train the model on RefSeq references. In my use-case I would like to identify and reconstruct plasmids from NGS data, but all of my plasmids are synthetic constructs…
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Currently these index files are being generated through different instances of the pipelines, both using [PlasmidUNCover](https://github.com/tiagofilipe12/PlasmidCoverage) and [mash_wrapper](https://g…
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Hello,
My first time around, I ran Canu on my bacterial nanopore reads filtered by NanoFilt on less stringent parameters (this meant very high coverage). This resulted in a single, circular contig …
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I do propose fruitfly.
Antibody or plasmids could be also good candidate, depending on the community present
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163164.16 , a Wolbachia genome, is currently naked. Could someone please clothe it with genes?
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Hello,
My job is still running but i have a question regarding [CORRECTION/LAYOUT].
At [CORRECTION/LAYOUT], rescued and uncorrected have zero coverage at expected corrected.
Other people's log ar…