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Hi. I have a harmony integrated object, seurat v5. It is already processed to join all the layers. During `prepare_CellAnn()`, I encounter this error saying no slot for counts even though I have it in…
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I'd like to use the `integrate_ChIP_RNA()` function to find the targets of my TF of interest. I have the RNA-seq differential gene expression result (TF inhibitor drug vs. vehicle control RNA-seq data…
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So, I performed direct RNA sequencing on nanopore and got fast5 files for them. When I do tombo resquiggle, should me reference fasta file by DNA or RNA sequence in fasta?
For instance, if I sequen…
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Lims Issue
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For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** WGS PCR free v5
**Protocol:**…
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It's currently not possible to import an experiment where there are multiple bioassays for the same biomaterial.
The simplest example of this scenario is a dataset with technical replicates where a g…
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given the [helix-based RNA-RNA interaction prediction mode](http://www.bioinf.uni-freiburg.de/Publications/Gelhausen-helixLength-2019.pdf), we want to apply context-sensitive length constraints.
ne…
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Dear sir,
I tried to create loh and got error below:
> loh
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If you use this as an input
```
The age of Earth is about 4.54 billion years. Evidence suggests that life on Earth has existed for at least 3.5 billion years, with the oldest physical traces of li…
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Not protein coding, so no UniProt id.
Can look up author given id (or sequence?) at https://www.rnacentral.org/
PHI-base eg PHI:6247 BSR0441 Brucella melitensis
https://www.rnacentral.org/searc…
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Hi
I am running sailfish-cir using output generated by CIRI2. I noticed that some of the circular RNA transcripts which have been quantified by the tool have multiple values. What does this signify? …